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@proceedings{60426,
author = {Porc, Jakub Paweł and Reigl, Tomáš and Navrkalová, Veronika and Hynšt, Jakub and Pál, Karol and Stránská, Kamila and Kotašková, Jana and Pospíšilová, Šárka},
booktitle = {EMBL Conference Cancer Genomics 2023, Heidelberg, Německo},
keywords = {Next-generation sequencing; targeted NGS panel LYNX; cancer genomics},
language = {eng},
title = {Web-based bioinformatic tool LYNX: LYmphoid NeXt-generation sequencing data analysis and visualization in hematological malignancies.},
url = {https://www.embl.org/about/info/course-and-conference-office/events/can23-01/#vf-tabs__section-programme},
year = {2023}
}
TY - CONF
ID - 60426
AU - Porc, Jakub Paweł - Reigl, Tomáš - Navrkalová, Veronika - Hynšt, Jakub - Pál, Karol - Stránská, Kamila - Kotašková, Jana - Pospíšilová, Šárka
PY - 2023
TI - Web-based bioinformatic tool LYNX: LYmphoid NeXt-generation sequencing data analysis and visualization in hematological malignancies.
KW - Next-generation sequencing
KW - targeted NGS panel LYNX
KW - cancer genomics
UR - https://www.embl.org/about/info/course-and-conference-office/events/can23-01/#vf-tabs__section-programme
N2 - Next-generation sequencing (NGS) is rapidly advancing technology in cancer genomics. The single NGS experiment can replace several laboratory tests and provide requested information about the tumor samples. However, new requirements for bioinformatic tools and computational resources are emerging in diagnostics and research. Following the development of an integrative, targeted NGS panel LYNX, enabling the detection of genetic markers recurring in lymphoid malignancies (PMID: 34082072), we focused on designing a LYNX bioinformatics tool, featuring all necessary analytical steps as well as a user interface (UI) for easy data representation and interpretation. State-of-the art resources were used to achieve our goal, such as React.js, D3.js visualisation library, Integrated Genome Browser and GATK industry standard variant calling pipeline.
ER -
PORC, Jakub Paweł, Tomáš REIGL, Veronika NAVRKALOVÁ, Jakub HYNŠT, Karol PÁL, Kamila STRÁNSKÁ, Jana KOTAŠKOVÁ a Šárka POSPÍŠILOVÁ. Web-based bioinformatic tool LYNX: LYmphoid NeXt-generation sequencing data analysis and visualization in hematological malignancies. In \textit{EMBL Conference Cancer Genomics 2023, Heidelberg, Německo}. 2023.
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