Detailed Information on Publication Record

@article{48238,
   author = {Štourač, Jan and Dubrava, Juraj and Musil, Miloš and Horáčková, Jana and Damborský, Jiří and Mazurenko, Stanislav and Bednář, David},
   article_location = {Oxford},
   article_number = {D1},
   doi = {http://dx.doi.org/10.1093/nar/gkaa981},
   keywords = {SEQUENCE; PREDICTION; VARIANTS},
   language = {eng},
   issn = {0305-1048},
   journal = {Nucleic Acids Research},
   title = {FireProt(DB): database of manually curated protein stability data},
   url = {https://academic.oup.com/nar/article/49/D1/D319/5964070},
   volume = {49},
   year = {2021}
}

TY  - JOUR
ID  - 48238
AU  - Štourač, Jan - Dubrava, Juraj - Musil, Miloš - Horáčková, Jana - Damborský, Jiří - Mazurenko, Stanislav - Bednář, David
PY  - 2021
TI  - FireProt(DB): database of manually curated protein stability data
JF  - Nucleic Acids Research
VL  - 49
IS  - D1
SP  - "D319"-"D324"
EP  - "D319"-"D324"
PB  - Oxford University Press
SN  - 0305-1048
KW  - SEQUENCE
KW  - PREDICTION
KW  - VARIANTS
UR  - https://academic.oup.com/nar/article/49/D1/D319/5964070
N2  - The majority of naturally occurring proteins have evolved to function under mild conditions inside the living organisms. One of the critical obstacles for the use of proteins in biotechnological applications is their insufficient stability at elevated temperatures or in the presence of salts. Since experimental screening for stabilizing mutations is typically laborious and expensive, in silico predictors are often used for narrowing down the mutational landscape. The recent advances in machine learning and artificial intelligence further facilitate the development of such computational tools. However, the accuracy of these predictors strongly depends on the quality and amount of data used for training and testing, which have often been reported as the current bottleneck of the approach. To address this problem, we present a novel database of experimental thermostability data for single-point mutants FireProt(DB). The database combines the published datasets, data extracted manually from the recent literature, and the data collected in our laboratory. Its user interface is designed to facilitate both types of the expected use: (i) the interactive explorations of individual entries on the level of a protein or mutation and (ii) the construction of highly customized and machine learning-friendly datasets using advanced searching and filtering. The database is freely available at https://loschmidt.chemi.muni.cz/fireprotdb.
ER  - 

ŠTOURAČ, Jan, Juraj DUBRAVA, Miloš MUSIL, Jana HORÁČKOVÁ, Jiří DAMBORSKÝ, Stanislav MAZURENKO and David BEDNÁŘ. FireProt(DB): database of manually curated protein stability data. \textit{Nucleic Acids Research}. Oxford: Oxford University Press, 2021, vol.~49, D1, p.~''D319''-''D324'', 6 pp. ISSN~0305-1048. Available from: https://dx.doi.org/10.1093/nar/gkaa981.