J 2019

Integrated epigenomic and transcriptomic analysis reveals TP63 as a novel player in clinically aggressive chronic lymphocytic leukemia

PAPAKONSTANTINOU, N., S. NTOUFA, M. TSAGIOPOULOU, T. MOYSIADIS, S. BHOI et. al.

Basic information

Original name

Integrated epigenomic and transcriptomic analysis reveals TP63 as a novel player in clinically aggressive chronic lymphocytic leukemia

Authors

PAPAKONSTANTINOU, N. (300 Greece), S. NTOUFA (300 Greece), M. TSAGIOPOULOU (300 Greece), T. MOYSIADIS (300 Greece), S. BHOI (752 Sweden), A. MALOUSI (300 Greece), F. PSOMOPOULOS (300 Greece), L. MANSOURI (752 Sweden), S. LAIDOU (300 Greece), D. PAPAZOGLOU (300 Greece), M. GOUNARI (300 Greece), K. PASENTSIS (300 Greece), Karla PLEVOVÁ (203 Czech Republic, belonging to the institution), V. KUCI-EMRULI (752 Sweden), M. DURAN-FERRER (724 Spain), Z. DAVIS (826 United Kingdom of Great Britain and Northern Ireland), S. EK (752 Sweden), D. ROSSI (756 Switzerland), G. GAIDANO (380 Italy), M. RITGEN (276 Germany), D. OSCIER (826 United Kingdom of Great Britain and Northern Ireland), N. STAVROYIANNI (300 Greece), Šárka POSPÍŠILOVÁ (203 Czech Republic, guarantor, belonging to the institution), F. DAVI (250 France), P. GHIA (380 Italy), A. HADZIDIMITRIOU (300 Greece), C. BELESSI (300 Greece), J.I. MARTIN-SUBERO (724 Spain), C. POTT (276 Germany), R. ROSENQUIST (752 Sweden) and K. STAMATOPOULOS (300 Greece)

Edition

International journal of cancer, HOBOKEN, International Union Against Cancer, 2019, 0020-7136

Other information

Language

English

Type of outcome

Článek v odborném periodiku

Country of publisher

United States of America

Confidentiality degree

není předmětem státního či obchodního tajemství

References:

RIV identification code

RIV/00216224:14110/19:00108479

Organization

Lékařská fakulta – Repository – Repository

UT WoS

000467099500009

Keywords in English

CLL; stereotypy; DNA methylation; gene expression; TP63

Links

LQ1601, research and development project. NV15-30015A, research and development project. 692298, interní kód Repo.
Změněno: 8/9/2020 06:33, RNDr. Daniel Jakubík

Abstract

V originále

Chronic lymphocytic leukemia (CLL) stereotyped subsets #6 and #8 include cases expressing unmutated B cell receptor immunoglobulin (BcR IG) (U-CLL). Subset #6 (IGHV1-69/IGKV3-20) is less aggressive compared to subset #8 (IGHV4-39/IGKV1(D)-39) which has the highest risk for Richter's transformation among all CLL. The underlying reasons for this divergent clinical behavior are not fully elucidated. To gain insight into this issue, here we focused on epigenomic signatures and their links with gene expression, particularly investigating genome-wide DNA methylation profiles in subsets #6 and #8 as well as other U-CLL cases not expressing stereotyped BcR IG. We found that subset #8 showed a distinctive DNA methylation profile compared to all other U-CLL cases, including subset #6. Integrated analysis of DNA methylation and gene expression revealed significant correlation for several genes, particularly highlighting a relevant role for the TP63 gene which was hypomethylated and overexpressed in subset #8. This observation was validated by quantitative PCR, which also revealed TP63 mRNA overexpression in additional nonsubset U-CLL cases. BcR stimulation had distinct effects on p63 protein expression, particularly leading to induction in subset #8, accompanied by increased CLL cell survival. This pro-survival effect was also supported by siRNA-mediated downregulation of p63 expression resulting in increased apoptosis. In conclusion, we report that DNA methylation profiles may vary even among CLL patients with similar somatic hypermutation status, supporting a compartmentalized approach to dissecting CLL biology. Furthermore, we highlight p63 as a novel prosurvival factor in CLL, thus identifying another piece of the complex puzzle of clinical aggressiveness. What's new? In chronic lymphocytic leukemia (CLL), cases with unmutated immunoglobulin receptors (U-CLL) are generally associated with inferior outcome, albeit still displaying considerable heterogeneity. Might such differences in CLL progression be explained by epigenetics? In this study, the authors found that an unusually aggressive subset of CLLs called subset #8 has a distinctive DNA-methylation profile. They also found that p63 is a novel pro-survival factor for CLL cells. These molecular studies may lead to new prognostic biomarkers, and possibly new therapeutic targets, for CLL.

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