HERMANOVA, M., P. HAVRANOVA-VIDLAKOVA, A. ONDRACKOVA, S.S. KUMAR, R. BOWATER and Miroslav FOJTA. Label-free Voltammetric Detection of Products of Terminal Deoxynucleotidyl Transferase Tailing Reaction. Electroanalysis. WEINHEIM: WILEY-VCH Verlag GmbH, 2019, vol. 31, No 2, p. 246-255. ISSN 1040-0397.
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Basic information
Original name Label-free Voltammetric Detection of Products of Terminal Deoxynucleotidyl Transferase Tailing Reaction
Authors HERMANOVA, M. (203 Czech Republic), P. HAVRANOVA-VIDLAKOVA (203 Czech Republic), A. ONDRACKOVA (203 Czech Republic), S.S. KUMAR (826 United Kingdom of Great Britain and Northern Ireland), R. BOWATER (826 United Kingdom of Great Britain and Northern Ireland) and Miroslav FOJTA (203 Czech Republic, guarantor, belonging to the institution).
Edition Electroanalysis, WEINHEIM, WILEY-VCH Verlag GmbH, 2019, 1040-0397.
Other information
Original language English
Type of outcome Article in a journal
Country of publisher Germany
Confidentiality degree is not subject to a state or trade secret
WWW URL
RIV identification code RIV/00216224:14740/19:00107289
Organization Středoevropský technologický institut – Repository – Repository
UT WoS 000459630500012
Keywords in English terminal deoxynucleotidyl transferase; oligonucleotide tailing; DNA electrochemistry; label free; nucleobase; reduction; oxidation
Links GBP206/12/G151, research and development project. LQ1601, research and development project. 692068, interní kód Repo.
Changed by Changed by: RNDr. Daniel Jakubík, učo 139797. Changed: 7/9/2020 18:11.
Abstract
A label-free approach that takes advantage of intrinsic electrochemical activity of nucleobases has been applied to study the products of terminal deoxynucleotidyl transferase (TdT) tailing reaction. DNA homooligonucleotides A(30), C-30 and T-30 were used as primers for the tailing reaction to which a dNTP - or a mixture of dNTPs - and TdT were added to form the tails. Electrochemical detection enabled study of the tailing reaction products created by various combinations of primers and dNTPs, with pyrolytic graphite electrode (PGE) being suitable for remarkably precise analysis of the length of tailing reaction products. Furthermore, the hanging mercury drop electrode (HMDE) was able to reveal formation of various DNA structures, such as DNA hairpins and G-quadruplexes, which influence the behavior of DNA molecules at the negatively charged surface of HMDE. Thus, the described approach proves to be an excellent tool for studying the TdT tailing reactions and for exploring how various DNA structures affect both the tailing reactions and electrochemical behavior of DNA oligonucleotides at electrode surfaces.
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