J 2025

Comprehensive profiling of lncRNAs and mRNAs enriched in small extracellular vesicles for early noninvasive detection of colorectal cancer: diagnostic panel assembly and extensive validation

VYCHYTILOVÁ, Petra; Markéta PAVLÍKOVÁ; Lucie PIFKOVÁ; Robin JUGAS; Táňa MACHÁČKOVÁ et. al.

Basic information

Original name

Comprehensive profiling of lncRNAs and mRNAs enriched in small extracellular vesicles for early noninvasive detection of colorectal cancer: diagnostic panel assembly and extensive validation

Authors

VYCHYTILOVÁ, Petra; Markéta PAVLÍKOVÁ; Lucie PIFKOVÁ; Robin JUGAS; Táňa MACHÁČKOVÁ; Lenka RADOVÁ; Milana SACHLOVA; Renata BARTOŠOVÁ; Tetiana SAMOILENKO; Zuzana FEČKOVÁ; Jana ORLÍČKOVÁ; Erika SLÁMOVÁ; Elleni PONECHAL MICHU; Dagmar AL TUKMACHI; Michaela RUČKOVÁ; Martina VODINSKÁ; Jan KOTOUCEK; Tina CATELA IVKOVIĆ; Marie BOUDNÁ; Lucia BOHOVICOVÁ; Teodor STANĚK; Jana HALÁMKOVÁ; Martin SVOBODA; Vladimír PROCHÁZKA; Tomáš GROLICH; Zdeněk KALA and Ondřej SLABÝ

Edition

MOLECULAR ONCOLOGY, ENGLAND, WILEY, 2025, 1574-7891

Other information

Language

English

Type of outcome

Article in a journal

Country of publisher

United States of America

Confidentiality degree

is not subject to a state or trade secret

References:

Organization

Lékařská fakulta – Repository – Repository

UT WoS

001524922000001

EID Scopus

2-s2.0-105010607030

Keywords in English

colorectal cancer; diagnostic panel; high-throughput expression profiling; long noncoding RNA; small extracellular vesicle

Links

LX22NPO5102, research and development project. NU20-03-00127, research and development project. e-INFRA CZ II, large research infrastructures.
Changed: 25/11/2025 00:51, RNDr. Daniel Jakubík

Abstract

In the original language

Early diagnosis of colorectal cancer (CRC) is crucial for successful treatment and mortality reduction. In this regard, blood-based tests play an indispensable role. Current research is focused on molecules actively secreted by tumor cells into small extracellular vesicles (EVs). This four-phase study included 613 CRC patients, 446 controls, and 120 precancerous lesions. High-throughput transcriptome profiling of small EVs was performed on samples from 100 CRC patients and 50 controls, followed by extensive validation using reverse transcription quantitative polymerase chain reaction. Diagnostic panels were developed via logistic regression and further characterized by enrolling samples from gastric cancer patients, CRC patients before/after surgery, and samples of tumor tissues/adjacent mucosa. We identified 17 molecules significantly elevated in CRC, with the highest levels in metastatic cases. Additionally, seven of them differentiated controls from precancerous lesions. Two diagnostic panels were developed, enabling early CRC detection with high sensitivity and specificity, outperforming the fecal occult blood test. Furthermore, six molecules were differentially expressed between tumor tissue and mucosa, while seven EV-enriched molecules decreased significantly after surgery. These findings highlight EVs as key reservoirs of CRC-associated molecules and a promising source of biomarkers.

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