J 2025

In-cell NMR spectroscopy of nucleic acids: Basic concepts, practical aspects, and applications

TRANTÍRKOVÁ, Silvie, Jakub HARNOŠ, Jan RYNEŠ, Vladimíra ZLÍNSKÁ, Lukáš TRANTÍREK et. al.

Basic information

Original name

In-cell NMR spectroscopy of nucleic acids: Basic concepts, practical aspects, and applications

Authors

TRANTÍRKOVÁ, Silvie, Jakub HARNOŠ, Jan RYNEŠ, Vladimíra ZLÍNSKÁ and Lukáš TRANTÍREK

Edition

Progress in Nuclear Magnetic Resonance Spectroscopy, Elsevier B.V. 2025, 0079-6565

Other information

Language

English

Type of outcome

Article in a journal

Country of publisher

United Kingdom of Great Britain and Northern Ireland

Confidentiality degree

is not subject to a state or trade secret

References:

URL

Organization

Středoevropský technologický institut – Repository – Repository

DOI

http://dx.doi.org/10.1016/j.pnmrs.2025.101560

UT WoS

001441431400001

EID Scopus

2-s2.0-85219243221

Keywords in English

In-cell NMR; DNA; RNA; Xenopus oocytes; Human cells; Cellular structural biology

Links

GF22-04242L, research and development project. LX22NPO5102, research and development project. MUNI/J/0004/2021, interní kód Repo.
Changed: 18/3/2025 00:51, RNDr. Daniel Jakubík

Abstract

V originále

In-cell NMR spectroscopy has recently emerged as a unique source of atomically resolved information on the structure, dynamics, and interactions of nucleic acids (NAs) within the intracellular space of living cells. Its recent applications have helped reveal fundamental differences in the behaviour of NAs in cells compared to the in vitro conditions commonly used for their study, as well as in physiologically distinct cellular states. This review covers the fundamental principles and practical aspects of acquiring in-cell NMR data in currently established eukaryotic cellular models, Xenopus laevis oocytes, and human cells. The primary purpose of this review is to present and discuss the technical and conceptual aspects of in-cell NMR sample preparations and their manipulations during in-cell NMR data acquisition, as understanding these aspects is vital for comprehending the physiological significance of in-cell NMR data and the information they provide. Considerations on the planning of in-cell NMR experiments and the presentation of in-cell NMR data on nucleic acids are discussed. We hope this will enable readers to navigate through the ever-growing pool of in-cell NMR literature and gain the knowledge needed to assess and comprehend published data independently. Additionally, we hope it will inspire some readers to actively participate in this rapidly expanding and fascinating field of cellular structural biology.
Displayed: 16/6/2025 11:50