J 2024

Computational Design of Pore-Forming Peptides with Potent Antimicrobial and Anticancer Activities

DEB, Rahul; Marcelo D. T. TORRES; Miroslav BOUDNÝ; Marketa KOBERSKA; Floriana CAPPIELLO et al.

Basic information

Original name

Computational Design of Pore-Forming Peptides with Potent Antimicrobial and Anticancer Activities

Authors

DEB, Rahul; Marcelo D. T. TORRES; Miroslav BOUDNÝ; Marketa KOBERSKA; Floriana CAPPIELLO; Miroslav POPPER; Katerina DVORAKOVA BENDOVA; Martina DRABINOVÁ; Adelheid HANÁČKOVÁ; Katy JEANNOT; Milos PETRIK; Maria Luisa MANGONI; Gabriela BALIKOVA NOVOTNA; Marek MRÁZ; Cesar DE LA FUENTE-NUNEZ and Robert VÁCHA

Edition

Journal of Medicinal Chemistry, Washington, American Chemical Society, 2024, 0022-2623

Other information

Language

English

Type of outcome

Article in a journal

Country of publisher

United States of America

Confidentiality degree

is not subject to a state or trade secret

References:

Marked to be transferred to RIV

Yes

RIV identification code

RIV/00216224:14740/24:00139985

Organization

Středoevropský technologický institut – Repository – Repository

EID Scopus

Keywords in English

STAPHYLOCOCCUS-AUREUS; HISTIDINE-RICH; PH; RESISTANCE; MODELS; MECHANISMS; DISCOVERY; SERINE; FIELD

Links

LM2015085, research and development project. LX22NPO5102, research and development project. LX22NPO5103, research and development project. 101001470, interní kód Repo. CESNET II, large research infrastructures. CIISB II, large research infrastructures. EATRIS-CZ III, large research infrastructures.
Changed: 4/6/2025 00:50, RNDr. Daniel Jakubík

Abstract

In the original language

Peptides that form transmembrane barrel-stave pores are potential alternative therapeutics for bacterial infections and cancer. However, their optimization for clinical translation is hampered by a lack of sequence-function understanding. Recently, we have de novo designed the first synthetic barrel-stave pore-forming antimicrobial peptide with an identified function of all residues. Here, we systematically mutate the peptide to improve pore-forming ability in anticipation of enhanced activity. Using computer simulations, supported by liposome leakage and atomic force microscopy experiments, we find that pore-forming ability, while critical, is not the limiting factor for improving activity in the submicromolar range. Affinity for bacterial and cancer cell membranes needs to be optimized simultaneously. Optimized peptides more effectively killed antibiotic-resistant ESKAPEE bacteria at submicromolar concentrations, showing low cytotoxicity to human cells and skin model. Peptides showed systemic anti-infective activity in a preclinical mouse model of Acinetobacter baumannii infection. We also demonstrate peptide optimization for pH-dependent antimicrobial and anticancer activity.

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