J 2023

Illuminating the mechanism and allosteric behavior of NanoLuc luciferase

NEMERGUT, Michal; Daniel PLUSKAL; Jana HORÁČKOVÁ; Tereza ŠUSTROVÁ; Jan TULIS et. al.

Basic information

Original name

Illuminating the mechanism and allosteric behavior of NanoLuc luciferase

Authors

NEMERGUT, Michal (703 Slovakia, belonging to the institution); Daniel PLUSKAL (203 Czech Republic, belonging to the institution); Jana HORÁČKOVÁ (203 Czech Republic, belonging to the institution); Tereza ŠUSTROVÁ (203 Czech Republic, belonging to the institution); Jan TULIS (203 Czech Republic, belonging to the institution); Tomáš BÁRTA (203 Czech Republic, belonging to the institution); Racha BAATALLAH; Glwadys GAGNOT; Veronika NOVÁKOVÁ (203 Czech Republic, belonging to the institution); Marika MAJEROVÁ (703 Slovakia, belonging to the institution); Karolina SEDLÁČKOVÁ (203 Czech Republic, belonging to the institution); Sérgio Manuel MARQUES (620 Portugal, belonging to the institution); Martin TOUL (203 Czech Republic, belonging to the institution); Jiří DAMBORSKÝ (203 Czech Republic, belonging to the institution); Zbyněk PROKOP (203 Czech Republic, belonging to the institution); David BEDNÁŘ (203 Czech Republic, belonging to the institution); Yves L. JANIN and Martin MAREK (203 Czech Republic, belonging to the institution)

Edition

Nature Communications, London, Nature Publishing Group, 2023, 2041-1723

Other information

Language

English

Type of outcome

Article in a journal

Country of publisher

Germany

Confidentiality degree

is not subject to a state or trade secret

References:

RIV identification code

RIV/00216224:14310/23:00133132

Organization

Přírodovědecká fakulta – Repository – Repository

UT WoS

001111154200005

EID Scopus

2-s2.0-85178172369

Keywords in English

MOLECULAR-DYNAMICS SIMULATIONS; BIOLOGICAL MACROMOLECULES; CRYSTAL-STRUCTURE; BINDING PROTEIN; CDNA CLONING; BIOLUMINESCENCE; COELENTERAMIDE; INTEGRATION; PREDICTION; SUBSTRATE

Links

EF17_043/0009632, research and development project. GA22-09853S, research and development project. LM2018140, research and development project. LM2023069, research and development project. 101087124, interní kód Repo. 857560, interní kód Repo. CIISB II, large research infrastructures.
Changed: 26/2/2025 00:50, RNDr. Daniel Jakubík

Abstract

V originále

NanoLuc, a superior beta-barrel fold luciferase, was engineered 10 years ago but the nature of its catalysis remains puzzling. Here experimental and computational techniques are combined, revealing that imidazopyrazinone luciferins bind to an intra-barrel catalytic site but also to an allosteric site shaped on the enzyme surface. Structurally, binding to the allosteric site prevents simultaneous binding to the catalytic site, and vice versa, through concerted conformational changes. We demonstrate that restructuration of the allosteric site can boost the luminescent reaction in the remote active site. Mechanistically, an intra-barrel arginine coordinates the imidazopyrazinone component of luciferin, which reacts with O2 via a radical charge-transfer mechanism, and then it also protonates the resulting excited amide product to form a light-emitting neutral species. Concomitantly, an aspartate, supported by two tyrosines, fine-tunes the blue color emitter to secure a high emission intensity. This information is critical to engineering the next-generation of ultrasensitive bioluminescent reporters.

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