J 2023

Illuminating the mechanism and allosteric behavior of NanoLuc luciferase

NEMERGUT, Michal; Daniel PLUSKAL; Jana HORÁČKOVÁ; Tereza ŠUSTROVÁ; Jan TULIS et al.

Basic information

Original name

Illuminating the mechanism and allosteric behavior of NanoLuc luciferase

Authors

NEMERGUT, Michal; Daniel PLUSKAL; Jana HORÁČKOVÁ; Tereza ŠUSTROVÁ; Jan TULIS; Tomáš BÁRTA; Racha BAATALLAH; Glwadys GAGNOT; Veronika NOVÁKOVÁ; Marika MAJEROVÁ; Karolina SEDLÁČKOVÁ; Sérgio Manuel MARQUES; Martin TOUL; Jiří DAMBORSKÝ; Zbyněk PROKOP; David BEDNÁŘ; Yves L. JANIN and Martin MAREK

Edition

Nature Communications, London, Nature Publishing Group, 2023, 2041-1723

Other information

Language

English

Type of outcome

Article in a journal

Country of publisher

Germany

Confidentiality degree

is not subject to a state or trade secret

References:

Marked to be transferred to RIV

Yes

RIV identification code

RIV/00216224:14310/23:00133132

Organization

Přírodovědecká fakulta – Repository – Repository

EID Scopus

Keywords in English

MOLECULAR-DYNAMICS SIMULATIONS; BIOLOGICAL MACROMOLECULES; CRYSTAL-STRUCTURE; BINDING PROTEIN; CDNA CLONING; BIOLUMINESCENCE; COELENTERAMIDE; INTEGRATION; PREDICTION; SUBSTRATE

Links

EF17_043/0009632, research and development project. GA22-09853S, research and development project. LM2018140, research and development project. LM2023069, research and development project. 101087124, interní kód Repo. 857560, interní kód Repo. CIISB II, large research infrastructures.
Changed: 26/2/2025 00:50, RNDr. Daniel Jakubík

Abstract

In the original language

NanoLuc, a superior beta-barrel fold luciferase, was engineered 10 years ago but the nature of its catalysis remains puzzling. Here experimental and computational techniques are combined, revealing that imidazopyrazinone luciferins bind to an intra-barrel catalytic site but also to an allosteric site shaped on the enzyme surface. Structurally, binding to the allosteric site prevents simultaneous binding to the catalytic site, and vice versa, through concerted conformational changes. We demonstrate that restructuration of the allosteric site can boost the luminescent reaction in the remote active site. Mechanistically, an intra-barrel arginine coordinates the imidazopyrazinone component of luciferin, which reacts with O2 via a radical charge-transfer mechanism, and then it also protonates the resulting excited amide product to form a light-emitting neutral species. Concomitantly, an aspartate, supported by two tyrosines, fine-tunes the blue color emitter to secure a high emission intensity. This information is critical to engineering the next-generation of ultrasensitive bioluminescent reporters.

Files attached