a 2023

Elucidating the Mechanisms of Genome Release in Picornaviruses using Cryo-EM and Coarse-Grained Simulations

SUKENÍK, Lukáš; Liya MUKHAMEDOVA; Michaela PROCHÁZKOVÁ; Karel ŠKUBNÍK; Pavel PLEVKA et al.

Základní údaje

Originální název

Elucidating the Mechanisms of Genome Release in Picornaviruses using Cryo-EM and Coarse-Grained Simulations

Název česky

Objasnění mechanismů uvolnění genomu u pikonavirů pomocí Kryo-EM a "Coarse-Grained" simulací

Autoři

SUKENÍK, Lukáš; Liya MUKHAMEDOVA; Michaela PROCHÁZKOVÁ; Karel ŠKUBNÍK; Pavel PLEVKA a Robert VÁCHA

Vydání

EBSA Congress 2023, 2023

Další údaje

Jazyk

angličtina

Typ výsledku

Konferenční abstrakta

Stát vydavatele

Švédsko

Utajení

není předmětem státního či obchodního tajemství

Odkazy

URL

Označené pro přenos do RIV

Ne

Organizace

Středoevropský technologický institut – Masarykova univerzita – Repozitář

Klíčová slova česky

pikonaviry; uvolnění genomu; KryoEM; simulace; nanočástice podobné virům

Klíčová slova anglicky

piconaviruses; genome release; cryoEM; coarse grained simulation; virus like particles

Návaznosti

LX22NPO5103, projekt VaV.
Změněno: 7. 3. 2024 03:59, RNDr. Daniel Jakubík

Anotace

V originále

Genome release is a crucial step in the life cycle of picornaviruses. During virus intracellular transport in endosomes, exposure to low pH triggers a conformational change in the capsid necessary for genome release. As a result, some viruses form pores on symmetry axes, which have been proposed to facilitate slow release of the viral genome. In contrast, recent cryo-EM images have shown that viral capsids can crack open and release the genome rapidly. Thus, the mechanism of genome release remains elusive. We combined in vitro cryo-EM observations of the genome release from four viruses with coarse-grained simulations of generic virus-like nanoparticles to investigate the release pathways and virion stability. Here we show how the nature of interactions between capsid building blocks determines virion stability and genome release pathway. We found that preformed pores at the symmetry axes were not necessary for slow genome release. Rather, slow release occurred through transient pores when interactions between capsid subunits were long-range, and the interactions within the genome were weak. In contrast, rapid release was preferred when capsid interactions were short-range and/or the genome interactions were strong. These findings elucidate the genome release behavior of viruses and suggest a design strategy for virus-like nanoparticles for drug delivery.
Zobrazeno: 4. 5. 2026 16:16