Přehled o publikaci
2023
Elucidating the Mechanisms of Genome Release in Picornaviruses using Cryo-EM and Coarse-Grained Simulations
SUKENÍK, Lukáš; Liya MUKHAMEDOVA; Michaela PROCHÁZKOVÁ; Karel ŠKUBNÍK; Pavel PLEVKA et al.Basic information
Original name
Elucidating the Mechanisms of Genome Release in Picornaviruses using Cryo-EM and Coarse-Grained Simulations
Name in Czech
Objasnění mechanismů uvolnění genomu u pikonavirů pomocí Kryo-EM a "Coarse-Grained" simulací
Authors
SUKENÍK, Lukáš; Liya MUKHAMEDOVA; Michaela PROCHÁZKOVÁ; Karel ŠKUBNÍK; Pavel PLEVKA and Robert VÁCHA
Edition
EBSA Congress 2023, 2023
Other information
Language
English
Type of outcome
Konferenční abstrakta
Country of publisher
Sweden
Confidentiality degree
is not subject to a state or trade secret
References:
Marked to be transferred to RIV
No
Organization
Středoevropský technologický institut – Repository – Repository
Keywords (in Czech)
pikonaviry; uvolnění genomu; KryoEM; simulace; nanočástice podobné virům
Keywords in English
piconaviruses; genome release; cryoEM; coarse grained simulation; virus like particles
Links
LX22NPO5103, research and development project.
Changed: 7/3/2024 03:59, RNDr. Daniel Jakubík
Abstract
In the original language
Genome release is a crucial step in the life cycle of picornaviruses. During virus intracellular transport in endosomes, exposure to low pH triggers a conformational change in the capsid necessary for genome release. As a result, some viruses form pores on symmetry axes, which have been proposed to facilitate slow release of the viral genome. In contrast, recent cryo-EM images have shown that viral capsids can crack open and release the genome rapidly. Thus, the mechanism of genome release remains elusive. We combined in vitro cryo-EM observations of the genome release from four viruses with coarse-grained simulations of generic virus-like nanoparticles to investigate the release pathways and virion stability. Here we show how the nature of interactions between capsid building blocks determines virion stability and genome release pathway. We found that preformed pores at the symmetry axes were not necessary for slow genome release. Rather, slow release occurred through transient pores when interactions between capsid subunits were long-range, and the interactions within the genome were weak. In contrast, rapid release was preferred when capsid interactions were short-range and/or the genome interactions were strong. These findings elucidate the genome release behavior of viruses and suggest a design strategy for virus-like nanoparticles for drug delivery.