a 2023

Elucidating the Mechanisms of Genome Release in Picornaviruses using Cryo-EM and Coarse-Grained Simulations

SUKENÍK, Lukáš; Liya MUKHAMEDOVA; Michaela PROCHÁZKOVÁ; Karel ŠKUBNÍK; Pavel PLEVKA et al.

Basic information

Original name

Elucidating the Mechanisms of Genome Release in Picornaviruses using Cryo-EM and Coarse-Grained Simulations

Name in Czech

Objasnění mechanismů uvolnění genomu u pikonavirů pomocí Kryo-EM a "Coarse-Grained" simulací

Authors

SUKENÍK, Lukáš; Liya MUKHAMEDOVA; Michaela PROCHÁZKOVÁ; Karel ŠKUBNÍK; Pavel PLEVKA and Robert VÁCHA

Edition

EBSA Congress 2023, 2023

Other information

Language

English

Type of outcome

Konferenční abstrakta

Country of publisher

Sweden

Confidentiality degree

is not subject to a state or trade secret

References:

Marked to be transferred to RIV

No

Organization

Středoevropský technologický institut – Repository – Repository

Keywords (in Czech)

pikonaviry; uvolnění genomu; KryoEM; simulace; nanočástice podobné virům

Keywords in English

piconaviruses; genome release; cryoEM; coarse grained simulation; virus like particles

Links

LX22NPO5103, research and development project.
Changed: 7/3/2024 03:59, RNDr. Daniel Jakubík

Abstract

In the original language

Genome release is a crucial step in the life cycle of picornaviruses. During virus intracellular transport in endosomes, exposure to low pH triggers a conformational change in the capsid necessary for genome release. As a result, some viruses form pores on symmetry axes, which have been proposed to facilitate slow release of the viral genome. In contrast, recent cryo-EM images have shown that viral capsids can crack open and release the genome rapidly. Thus, the mechanism of genome release remains elusive. We combined in vitro cryo-EM observations of the genome release from four viruses with coarse-grained simulations of generic virus-like nanoparticles to investigate the release pathways and virion stability. Here we show how the nature of interactions between capsid building blocks determines virion stability and genome release pathway. We found that preformed pores at the symmetry axes were not necessary for slow genome release. Rather, slow release occurred through transient pores when interactions between capsid subunits were long-range, and the interactions within the genome were weak. In contrast, rapid release was preferred when capsid interactions were short-range and/or the genome interactions were strong. These findings elucidate the genome release behavior of viruses and suggest a design strategy for virus-like nanoparticles for drug delivery.

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