J 2022

Computer-aided engineering of staphylokinase toward enhanced affinity and selectivity for plasmin

NIKITIN, Dmitri; Jan MIČAN; Martin TOUL; David BEDNÁŘ; Michaela PEŠKOVÁ et al.

Basic information

Original name

Computer-aided engineering of staphylokinase toward enhanced affinity and selectivity for plasmin

Authors

NIKITIN, Dmitri; Jan MIČAN; Martin TOUL; David BEDNÁŘ; Michaela PEŠKOVÁ; Patrícia KITTOVÁ; Sandra THALEROVÁ; Jan VÍTEČEK; Jiří DAMBORSKÝ; Robert MIKULÍK; Sarel J. FLEISHMAN; Zbyněk PROKOP and Martin MAREK

Edition

Computational and Structural Biotechnology Journal, Amsterdam, Elsevier, 2022, 2001-0370

Other information

Language

English

Type of outcome

Article in a journal

Country of publisher

Netherlands

Confidentiality degree

is not subject to a state or trade secret

References:

Marked to be transferred to RIV

Yes

RIV identification code

RIV/00216224:14310/22:00126020

Organization

Přírodovědecká fakulta – Repository – Repository

EID Scopus

Keywords in English

Acute myocardial infarction; Stroke treatments; Thrombolytics; Plasminogen activators; Staphylokinase; Rational design; Affinity engineering; Enzyme kinetics; AffiLib

Links

LM2018131, research and development project. LM2018140, research and development project. CIISB II, large research infrastructures.
Changed: 22/2/2025 00:51, RNDr. Daniel Jakubík

Abstract

In the original language

Cardio-and cerebrovascular diseases are leading causes of death and disability, resulting in one of the highest socio-economic burdens of any disease type. The discovery of bacterial and human plasminogen activators and their use as thrombolytic drugs have revolutionized treatment of these pathologies. Fibrin specific agents have an advantage over non-specific factors because of lower rates of deleterious side effects. Specifically, staphylokinase (SAK) is a pharmacologically attractive indirect plasminogen activator protein of bacterial origin that forms stoichiometric noncovalent complexes with plasmin, promoting the conversion of plasminogen into plasmin. Here we report a computer-assisted re-design of the molecular surface of SAK to increase its affinity for plasmin. A set of computationally designed SAK mutants was produced recombinantly and biochemically characterized. Screening revealed a pharmacologically interesting SAK mutant with-7-fold enhanced affinity toward plasmin,-10-fold improved plasmin selectivity and moderately higher plasmin-generating efficiency in vitro. Collectively, the results obtained provide a framework for SAK engineering using computational affinity-design that could pave the way to next-generation of effective, highly selective, and less toxic thrombolytics.

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